Index

_

__array__() (misalign.canvas.canvas_rectangular.array_like method) (misalign.model.image.MISImage method) (misalign.model.image.MISImageFile method) (misalign.model.image.MISImageHDF5 method) __init__() (misalign.alignment.interactive_manual.IMRControls method) (misalign.alignment.interactive_manual.InteractiveManualRelation method) (misalign.calibration.calibrate.CalibrationManual method) (misalign.canvas.canvas_rectangular.array_like method) (misalign.model.image.MISImage method) (misalign.model.image.MISImageFile method) (misalign.model.image.MISImageHDF5 method) (misalign.model.project.MISProject method) (misalign.model.project.MISProjectHDF5 method) (misalign.model.project.MISProjectJSON method) (misalign.model.relation.MISRelation method) (misalign.model.relation.MISRelationPoints method) (misalign.model.relation.MISRelationRectangular method) (misalign.model.relation.MISRelationReference method)

__str__() (misalign.model.image.MISImage method) (misalign.model.image.MISImageFile method) (misalign.model.image.MISImageHDF5 method) (misalign.model.project.MISProject method) (misalign.model.relation.MISRelation method) (misalign.model.relation.MISRelationPoints method) (misalign.model.relation.MISRelationRectangular method) (misalign.model.relation.MISRelationReference method)

A

add_relation() (misalign.model.project.MISProject method)

add_scale_bar() (in module misalign.calibration.scale_bar) array_like (class in misalign.canvas.canvas_rectangular)

B

build() (misalign.model.project.MISProjectHDF5 class method) (misalign.model.project.MISProjectJSON class method)

build_normalization() (in module misalign.canvas.canvas_rectangular)

C

calibrate_measurement() (misalign.calibration.calibrate.CalibrationManual method) calibrate_resolve() (misalign.calibration.calibrate.CalibrationManual method) calibrate_setup() (misalign.calibration.calibrate.CalibrationManual method) calibration_from_json() (in module misalign.calibration.calibrate) calibration_from_mis() (in module misalign.calibration.calibrate)

CalibrationManual (class in misalign.calibration.calibrate) change() (misalign.alignment.interactive_manual.InteractiveManualRelation method) check_hdf5_path() (misalign.model.image.MISImageHDF5 method) check_image_path() (misalign.model.image.MISImageFile method) convert_mis_project_json() (in module misalign.model.project)

F

find_image_path() (misalign.model.image.MISImage method) (misalign.model.image.MISImageFile method) (misalign.model.image.MISImageHDF5 method) find_image_paths() (misalign.model.project.MISProject method) find_relations() (misalign.model.project.MISProject method) find_relative_extents() (in module misalign.canvas.canvas_rectangular) find_relative_extents_project() (in module misalign.canvas.canvas_rectangular)

for_json() (misalign.model.image.MISImage method) (misalign.model.image.MISImageFile method) (misalign.model.image.MISImageHDF5 method) (misalign.model.project.MISProject method) (misalign.model.relation.MISRelation method) (misalign.model.relation.MISRelationPoints method) (misalign.model.relation.MISRelationRectangular method) (misalign.model.relation.MISRelationReference method)

G

get_calibration() (misalign.model.project.MISProject method) get_image() (misalign.model.project.MISProject method) get_image_names() (misalign.model.project.MISProject method) get_mis() (misalign.alignment.interactive_manual.IMRControls method) get_project_path() (misalign.model.project.MISProject method) get_reference() (misalign.model.relation.MISRelation method) (misalign.model.relation.MISRelationPoints method) (misalign.model.relation.MISRelationRectangular method) (misalign.model.relation.MISRelationReference method)

get_relation() (misalign.alignment.interactive_manual.InteractiveManualRelation method) (misalign.model.relation.MISRelation method) (misalign.model.relation.MISRelationPoints method) (misalign.model.relation.MISRelationRectangular method) (misalign.model.relation.MISRelationReference method) get_relations() (misalign.model.project.MISProject method)

I

image_with_scale_bar() (in module misalign.calibration.scale_bar) IMRControls (class in misalign.alignment.interactive_manual)

index_relation() (misalign.model.project.MISProject method) InteractiveManualRelation (class in misalign.alignment.interactive_manual)

L

load() (misalign.model.project.MISProjectHDF5 class method) (misalign.model.project.MISProjectJSON class method)

load_calibration() (misalign.calibration.calibrate.CalibrationManual method)

M

misalign.alignment module misalign.alignment.interactive_manual module misalign.calibration module misalign.calibration.calibrate module misalign.calibration.scale_bar module misalign.canvas module misalign.canvas.canvas_rectangular module misalign.model module misalign.model.image module misalign.model.project module misalign.model.relation module

MISImage (class in misalign.model.image) MISImageFile (class in misalign.model.image) MISImageHDF5 (class in misalign.model.image) MISProject (class in misalign.model.project) MISProjectHDF5 (class in misalign.model.project) MISProjectJSON (class in misalign.model.project) MISRelation (class in misalign.model.relation) MISRelationPoints (class in misalign.model.relation) MISRelationRectangular (class in misalign.model.relation) MISRelationReference (class in misalign.model.relation) module misalign.alignment misalign.alignment.interactive_manual misalign.calibration misalign.calibration.calibrate misalign.calibration.scale_bar misalign.canvas misalign.canvas.canvas_rectangular misalign.model misalign.model.image misalign.model.project misalign.model.relation

P

place_in_canvas() (in module misalign.canvas.canvas_rectangular) plot_points() (misalign.alignment.interactive_manual.InteractiveManualRelation method)

print_length_per_pixel() (misalign.calibration.calibrate.CalibrationManual method) print_pixels_per_length() (misalign.calibration.calibrate.CalibrationManual method)

R

rectangular_solve() (in module misalign.canvas.canvas_rectangular) rectangular_solve_project() (in module misalign.canvas.canvas_rectangular) relate_resolve() (misalign.alignment.interactive_manual.InteractiveManualRelation method) relate_setup() (misalign.alignment.interactive_manual.InteractiveManualRelation method) remove_image() (misalign.model.project.MISProject method) remove_relation() (misalign.model.project.MISProject method)

rename_image_relations() (misalign.model.project.MISProject method) render_blended() (in module misalign.canvas.canvas_rectangular) render_blended_project() (in module misalign.canvas.canvas_rectangular) render_unblended() (in module misalign.canvas.canvas_rectangular) render_unblended_project() (in module misalign.canvas.canvas_rectangular) resolve_extents() (in module misalign.canvas.canvas_rectangular)

S

save() (misalign.model.project.MISProjectHDF5 method) (misalign.model.project.MISProjectJSON method) save_calibrated_image() (in module misalign.calibration.scale_bar) save_calibration() (misalign.calibration.calibrate.CalibrationManual method) scale_bar_calibrate() (in module misalign.calibration.scale_bar) set_calibration() (misalign.model.project.MISProject method) set_image() (misalign.model.project.MISProject method) set_images() (misalign.model.project.MISProject method) set_project_path() (misalign.model.project.MISProject method)

set_relation() (misalign.model.project.MISProject method) set_relations() (misalign.model.project.MISProject method) setup_image() (in module misalign.model.image) setup_relation() (in module misalign.model.relation) shape (misalign.canvas.canvas_rectangular.array_like property) (misalign.model.image.MISImage property) (misalign.model.image.MISImageFile property) (misalign.model.image.MISImageHDF5 property) simple_relation_map() (in module misalign.canvas.canvas_rectangular)

W

weight_dfe() (in module misalign.canvas.canvas_rectangular)

weight_flat() (in module misalign.canvas.canvas_rectangular)