Examples

The primary workflow for using MISalign is:

• setup.ipynb - Create a project: select images files & scale calibration.

  • Optionally first: calibration.ipynb - Setup scale calibration by selecting points on an image.

• align.ipynb - Select matching points in image pairs to relate the images.

• render.ipynb - Render image montages with and without blending and add scale bar overlays.

This workflow has preconfigured paths and intermediate files in the notebooks and examples (specifically examples/project_a) of the Github Repository.

Primary Workflow Notebooks

• Project Setup
  • Basic Setup
  • Advanced Setups
• Calibrate from Image
  • Basic Calibration
  • Confirm Calibration
• Align Images
  • Basic Alignment
• Render Image Montages
  • Render Setup
  • Render Unblended
  • Render Blended
  • Image Scale Bar

Example Notebooks

• HDF5 Examples
  • Native HDF5 Support
  • NeXus Format HDF5 Support
  • Dream3D Format HDF5 Support